Skip site navigation (1) Skip section navigation (2)

Site Navigation

FreeBSD Ports: Biology

Search ports for:

Software related to biology.

InsightToolkit-2.8.1_1
Insight Toolkit
Long description | Sources | Main Web Site
Maintained by: bacon@smithers.neuro.mcw.edu
Requires: cmake-2.6.1_1
Also listed in: Science

LBreeder-1.0_11
Allows you to display and breed L-system forms
Long description | Package | Sources | Main Web Site
Maintained by: dyeske@gmail.com
Requires: atk-1.22.0_1, bitstream-vera-1.10_4, cairo-1.6.4_3,1, compositeproto-0.4, damageproto-1.1.0_2, encodings-1.0.2,1, expat-2.0.1, fixesproto-4.0, font-bh-ttf-1.0.0, font-misc-ethiopic-1.0.0, font-misc-meltho-1.0.0_1, font-util-1.0.1, fontconfig-2.5.0,1, freetype2-2.3.7, gamin-0.1.9_2, gettext-0.17_1, gio-fam-backend-2.16.5, glib-2.16.5, gmake-3.81_3, gtk-2.12.11_1, hicolor-icon-theme-0.10_2, inputproto-1.4.2.1, jpeg-6b_7, kbproto-1.0.3, libGL-7.0.3, libGLU-7.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXcomposite-0.4.0,1, libXcursor-1.1.9_1, libXdamage-1.1.1, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXfixes-4.0.3_1, libXft-2.1.13, libXi-1.1.3,1, libXinerama-1.0.2,1, libXmu-1.0.3,1, libXrandr-1.2.2_1, libXrender-0.9.4_1, libXt-1.0.5_1, libXxf86vm-1.0.1, libdrm-2.3.1, libfontenc-1.0.4, libglut-7.0.3, libiconv-1.11_1, libpthread-stubs-0.1, libxcb-1.1.90.1, libxml2-2.6.32_2, mkfontdir-1.0.3_1, mkfontscale-1.0.3, pango-1.20.5, pcre-7.8, perl-5.8.8_1, pixman-0.10.0_2, pkg-config-0.23_1, png-1.2.33, python25-2.5.2_3, randrproto-1.2.1, renderproto-0.9.3, shared-mime-info-0.51, tiff-3.8.2_2, wxgtk2-2.4.2_16, xcb-proto-1.2, xcb-util-0.2.1, xextproto-7.0.2, xf86vidmodeproto-2.2.2, xineramaproto-1.1.2, xorg-fonts-truetype-7.3, xproto-7.0.10_1

adun-0.8.2_1
Molecular Simulator for GNUstep
Long description | Package | Sources | Main Web Site
Maintained by: dinoex@FreeBSD.org
Requires: aspell-0.60.6_2, cups-base-1.3.9, expat-2.0.1, ffcall-1.10_1, fontconfig-2.5.0,1, freetype-1.3.1_4, freetype2-2.3.7, gcc-4.2.5_20080702, gettext-0.17_1, gmake-3.81_3, gnustep-back-0.14.0, gnustep-base-1.16.4, gnustep-gui-0.14.0, gnustep-make-2.0.6, gnutls-2.4.2_1, gsl-1.11, jpeg-6b_7, kbproto-1.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXft-2.1.13, libXmu-1.0.3,1, libXrender-0.9.4_1, libXt-1.0.5_1, libaudiofile-0.2.6, libgcrypt-1.4.1_1, libgmp-4.2.4, libgpg-error-1.6_1, libiconv-1.11_1, libungif-4.1.4_5, libxml2-2.6.32_2, libxslt-1.1.24_1, mpfr-2.3.2, pkg-config-0.23_1, png-1.2.33, portaudio-19.b1175, renderproto-0.9.3, tiff-3.8.2_2, xextproto-7.0.2, xproto-7.0.10_1
Also listed in: Gnustep

afni-2008.01.02.1043_1
Advanced Functional Neuro Imaging
Long description | Package | Sources | Main Web Site
Maintained by: bacon@smithers.neuro.mcw.edu
Requires: damageproto-1.1.0_2, endian-1.0, fixesproto-4.0, gettext-0.17_1, gmake-3.81_3, inputproto-1.4.2.1, jbigkit-1.6, jpeg-6b_7, kbproto-1.0.3, libGL-7.0.3, libGLU-7.0.3, libGLw-7.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXaw-1.0.4_1,1, libXdamage-1.1.1, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXfixes-4.0.3_1, libXi-1.1.3,1, libXmu-1.0.3,1, libXp-1.0.0,1, libXpm-3.5.7, libXt-1.0.5_1, libXxf86vm-1.0.1, libdrm-2.3.1, libiconv-1.11_1, mpeg_encode-1.5b, netpbm-10.26.58, open-motif-2.2.3_5, perl-5.8.8_1, pkg-config-0.23_1, png-1.2.33, printproto-1.0.3, tiff-3.8.2_2, whirlgif-3.04, xbitmaps-1.0.1, xextproto-7.0.2, xf86vidmodeproto-2.2.2, xproto-7.0.10_1
Also listed in: Science, Graphics

ariadne-1.3
Programs to compare protein sequences and profiles
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: gettext-0.17_1, gmake-3.81_3, libiconv-1.11_1

artemis-9_1
A DNA sequence viewer and annotation tool
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: diablo-jdk-1.6.0.07.02_2, inputproto-1.4.2.1, javavmwrapper-2.3.2, kbproto-1.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXi-1.1.3,1, libXp-1.0.0,1, libXt-1.0.5_1, libXtst-1.0.3_1, pkg-config-0.23_1, printproto-1.0.3, recordproto-1.13.2, xextproto-7.0.2, xproto-7.0.10_1
Also listed in: Java

avida-2.8.1
Avida is an auto-adaptive genetic system designed for ALife research
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: cmake-2.6.1_1, gcc-4.2.5_20080702, libgmp-4.2.4, libiconv-1.11_1, mpfr-2.3.2

babel-1.6_3
Converts among various molecular file formats
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Also listed in: Converters

belvu-2.29
A viewer for multiple sequence alignments
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: linux_base-fc-4_13

biococoa-1.6.0_2
Bioinformatics framework
Long description | Package | Sources | Main Web Site
Maintained by: dinoex@FreeBSD.org
Requires: aspell-0.60.6_2, cups-base-1.3.9, expat-2.0.1, ffcall-1.10_1, fontconfig-2.5.0,1, freetype-1.3.1_4, freetype2-2.3.7, gcc-4.2.5_20080702, gettext-0.17_1, gmake-3.81_3, gnustep-back-0.14.0, gnustep-base-1.16.4, gnustep-gui-0.14.0, gnustep-make-2.0.6, gnutls-2.4.2_1, jpeg-6b_7, kbproto-1.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXft-2.1.13, libXmu-1.0.3,1, libXrender-0.9.4_1, libXt-1.0.5_1, libaudiofile-0.2.6, libgcrypt-1.4.1_1, libgmp-4.2.4, libgpg-error-1.6_1, libiconv-1.11_1, libungif-4.1.4_5, libxml2-2.6.32_2, libxslt-1.1.24_1, mpfr-2.3.2, pkg-config-0.23_1, png-1.2.33, portaudio-19.b1175, renderproto-0.9.3, tiff-3.8.2_2, xextproto-7.0.2, xproto-7.0.10_1
Also listed in: Gnustep

biojava-1.5.b2_2,1
Open-source java tools for processing biological data
Long description | Sources | Main Web Site
Maintained by: nemoliu@FreeBSD.org
Requires: apache-ant-1.7.0_2, diablo-jdk-1.5.0.07.01_12, diablo-jdk-1.6.0.07.02_2, hsqldb-1.8.0.10, inputproto-1.4.2.1, jakarta-commons-cli-1.0_2,1, jakarta-commons-collections-3.2.1, jakarta-commons-dbcp-1.2.1_2, jakarta-commons-pool-1.3_2, jakarta-regexp-1.5_2, javavmwrapper-2.3.2, junit-4.4_1, kbproto-1.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXi-1.1.3,1, libXp-1.0.0,1, libXt-1.0.5_1, libXtst-1.0.3_1, pkg-config-0.23_1, printproto-1.0.3, recordproto-1.13.2, xerces-j-2.9.1, xextproto-7.0.2, xproto-7.0.10_1
Also listed in: Java

blat-34
A fast tool for local sequence similarity searches
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: gettext-0.17_1, gmake-3.81_3, libiconv-1.11_1

boinc-simap-5.10.5.09_2
Similarity Matrix of Proteins project for BOINC
Long description | Package | Sources | Main Web Site
Maintained by: pav@FreeBSD.org
Requires: ORBit2-2.14.14, atk-1.22.0_1, bitstream-vera-1.10_4, boinc-client-6.2.14, cairo-1.6.4_3,1, compositeproto-0.4, curl-7.18.0, damageproto-1.1.0_2, encodings-1.0.2,1, expat-2.0.1, fixesproto-4.0, font-bh-ttf-1.0.0, font-misc-ethiopic-1.0.0, font-misc-meltho-1.0.0_1, font-util-1.0.1, fontconfig-2.5.0,1, freetype2-2.3.7, gamin-0.1.9_2, gconf2-2.22.0_1, gettext-0.17_1, gio-fam-backend-2.16.5, glib-2.16.5, gnomehier-2.3_10, gstreamer-0.10.21, gstreamer-plugins-0.10.21,3, gtk-2.12.11_1, hicolor-icon-theme-0.10_2, inputproto-1.4.2.1, jpeg-6b_7, kbproto-1.0.3, libGL-7.0.3, libGLU-7.0.3, libICE-1.0.4_1,1, libIDL-0.8.11, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXcomposite-0.4.0,1, libXcursor-1.1.9_1, libXdamage-1.1.1, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXfixes-4.0.3_1, libXft-2.1.13, libXi-1.1.3,1, libXinerama-1.0.2,1, libXmu-1.0.3,1, libXrandr-1.2.2_1, libXrender-0.9.4_1, libXt-1.0.5_1, libXv-1.0.3_1,1, libXxf86vm-1.0.1, libdrm-2.3.1, libfontenc-1.0.4, libglut-7.0.3, libiconv-1.11_1, libmspack-0.0.20040308_3, liboil-0.3.15, libpthread-stubs-0.1, libxcb-1.1.90.1, libxml2-2.6.32_2, mkfontdir-1.0.3_1, mkfontscale-1.0.3, pango-1.20.5, pcre-7.8, perl-5.8.8_1, pixman-0.10.0_2, pkg-config-0.23_1, png-1.2.33, popt-1.7_5, python25-2.5.2_3, randrproto-1.2.1, renderproto-0.9.3, shared-mime-info-0.51, tiff-3.8.2_2, videoproto-2.2.2, wxgtk2-2.8.9, wxgtk2-common-2.8.9, xcb-proto-1.2, xcb-util-0.2.1, xextproto-7.0.2, xf86vidmodeproto-2.2.2, xineramaproto-1.1.2, xorg-fonts-truetype-7.3, xproto-7.0.10_1

chemeq-1.50_1
Outputs LaTeX code for chemical reaction
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: bison-2.3_4,1, gettext-0.17_1, libiconv-1.11_1, m4-1.4.11,1
Also listed in: Textproc

clustalw-2.0.6
A multiple alignment program for DNA or proteins
Long description | Sources | Main Web Site
Maintained by: wenheping@gmail.com

consed-16.0
A graphical tool for editing Phrap assemblies
Long description | Sources | Main Web Site
Maintained by: mzaki@biol.s.u-tokyo.ac.jp
Requires: linux-expat-1.95.8, linux-fontconfig-2.2.3_7, linux-xorg-libs-6.8.2_5, linux_base-fc-4_13, perl-5.8.8_1, phd2fasta-0.990622.f, phrap-0.990329, phred-0.020425.c

crimap-2.4
Creation of multilocus linkage maps
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org

cycle-0.3.1_3
A calendar program for women
Long description | Package | Sources | Main Web Site
Maintained by: danfe@FreeBSD.org
Requires: atk-1.22.0_1, bitstream-vera-1.10_4, cairo-1.6.4_3,1, compositeproto-0.4, damageproto-1.1.0_2, encodings-1.0.2,1, expat-2.0.1, fixesproto-4.0, font-bh-ttf-1.0.0, font-misc-ethiopic-1.0.0, font-misc-meltho-1.0.0_1, font-util-1.0.1, fontconfig-2.5.0,1, freetype2-2.3.7, gamin-0.1.9_2, gettext-0.17_1, gio-fam-backend-2.16.5, glib-2.16.5, gtk-2.12.11_1, hicolor-icon-theme-0.10_2, inputproto-1.4.2.1, jpeg-6b_7, kbproto-1.0.3, libGL-7.0.3, libGLU-7.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXcomposite-0.4.0,1, libXcursor-1.1.9_1, libXdamage-1.1.1, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXfixes-4.0.3_1, libXft-2.1.13, libXi-1.1.3,1, libXinerama-1.0.2,1, libXmu-1.0.3,1, libXrandr-1.2.2_1, libXrender-0.9.4_1, libXt-1.0.5_1, libXxf86vm-1.0.1, libdrm-2.3.1, libfontenc-1.0.4, libglut-7.0.3, libiconv-1.11_1, libmspack-0.0.20040308_3, libpthread-stubs-0.1, libxcb-1.1.90.1, libxml2-2.6.32_2, mkfontdir-1.0.3_1, mkfontscale-1.0.3, pango-1.20.5, pcre-7.8, perl-5.8.8_1, pixman-0.10.0_2, pkg-config-0.23_1, png-1.2.33, py25-imaging-1.1.6_2, py25-numeric-24.2_2, py25-opengl-2.0.1.07_4, py25-tkinter-2.5.2_2, py25-wxPython-2.6.3.3_1, py25-wxPython-common-2.6.3.3_2, python25-2.5.2_3, randrproto-1.2.1, renderproto-0.9.3, shared-mime-info-0.51, tcl-8.4.19,1, tiff-3.8.2_2, tk-8.4.19,2, wxgtk2-2.6.3_5, wxgtk2-common-2.6.3_4, wxgtk2-contrib-2.6.3_3, wxgtk2-contrib-common-2.6.3_3, xcb-proto-1.2, xcb-util-0.2.1, xextproto-7.0.2, xf86vidmodeproto-2.2.2, xineramaproto-1.1.2, xorg-fonts-truetype-7.3, xproto-7.0.10_1
Also listed in: Deskutils, Python

distribfold-0.1.20040613
distributedfolding.org distributed protein folding project
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: compat4x-i386-5.3_9, localedata-5.4
Also listed in: Net

dna-qc-1993.07.26
A quality control algorithm for DNA sequencing projects
Long description | Package | Sources
Maintained by: ports@FreeBSD.org

dotter-20021204
A viewer for multiple sequence alignments
Long description | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: linux_base-fc-4_13

dtiquery-1.1_1
Stanford DTI Visualization tool
Long description | Sources | Main Web Site
Maintained by: jwbacon@tds.net
Requires: ORBit2-2.14.14, atk-1.22.0_1, bitstream-vera-1.10_4, cairo-1.6.4_3,1, compositeproto-0.4, cups-base-1.3.9, damageproto-1.1.0_2, dmxproto-2.2.2, encodings-1.0.2,1, expat-2.0.1, fixesproto-4.0, font-bh-ttf-1.0.0, font-misc-ethiopic-1.0.0, font-misc-meltho-1.0.0_1, font-util-1.0.1, fontcacheproto-0.1.2, fontconfig-2.5.0,1, fontsproto-2.0.2, freetype2-2.3.7, gamin-0.1.9_2, gconf2-2.22.0_1, gettext-0.17_1, gio-fam-backend-2.16.5, glib-2.16.5, gmake-3.81_3, gnomehier-2.3_10, gnutls-2.4.2_1, gstreamer-0.10.21, gstreamer-plugins-0.10.21,3, gtk-2.12.11_1, hicolor-icon-theme-0.10_2, inputproto-1.4.2.1, jama-1.2.5, jpeg-6b_7, kbproto-1.0.3, lcms-1.17,1, libFS-1.0.0_1, libGL-7.0.3, libGLU-7.0.3, libICE-1.0.4_1,1, libIDL-0.8.11, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXScrnSaver-1.1.2, libXTrap-1.0.0, libXau-1.0.3_2, libXaw-1.0.4_1,1, libXcomposite-0.4.0,1, libXcursor-1.1.9_1, libXdamage-1.1.1, libXdmcp-1.0.2_1, libXevie-1.0.2, libXext-1.0.3,1, libXfixes-4.0.3_1, libXfont-1.3.1_3,1, libXfontcache-1.0.4, libXft-2.1.13, libXi-1.1.3,1, libXinerama-1.0.2,1, libXmu-1.0.3,1, libXp-1.0.0,1, libXpm-3.5.7, libXprintAppUtil-1.0.1, libXprintUtil-1.0.1, libXrandr-1.2.2_1, libXrender-0.9.4_1, libXres-1.0.3_3, libXt-1.0.5_1, libXtst-1.0.3_1, libXv-1.0.3_1,1, libXvMC-1.0.4_1, libXxf86dga-1.0.2, libXxf86misc-1.0.1, libXxf86vm-1.0.1, libdmx-1.0.2_1, libdrm-2.3.1, libfontenc-1.0.4, libgcrypt-1.4.1_1, libgpg-error-1.6_1, libiconv-1.11_1, libmng-1.0.10, libmspack-0.0.20040308_3, liboil-0.3.15, liboldX-1.0.1, libpthread-stubs-0.1, libxcb-1.1.90.1, libxkbfile-1.0.4, libxkbui-1.0.2_1, libxml2-2.6.32_2, mkfontdir-1.0.3_1, mkfontscale-1.0.3, nas-1.9.1_2, pango-1.20.5, pcre-7.8, perl-5.8.8_1, pixman-0.10.0_2, pkg-config-0.23_1, png-1.2.33, popt-1.7_5, printproto-1.0.3, python25-2.5.2_3, qt-3.3.8_9, randrproto-1.2.1, rapid-2.01, recordproto-1.13.2, renderproto-0.9.3, scrnsaverproto-1.1.0, shared-mime-info-0.51, tcl-8.4.19,1, tiff-3.8.2_2, tk-8.4.19,2, tnt-1.2.6, trapproto-3.4.3, videoproto-2.2.2, vtk-5.0.4, wxgtk2-2.8.9, wxgtk2-common-2.8.9, xcb-proto-1.2, xcb-util-0.2.1, xextproto-7.0.2, xf86dgaproto-2.0.3, xf86miscproto-0.9.2, xf86vidmodeproto-2.2.2, xineramaproto-1.1.2, xorg-fonts-truetype-7.3, xorg-libraries-7.3_2, xproto-7.0.10_1, xtrans-1.0.4
Also listed in: Science

embassy-5.0.0
A collection of contributed EMBOSS applications
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: emboss-5.0.0, freetype2-2.3.7, gd-2.0.35,1, gettext-0.17_1, gmake-3.81_3, jpeg-6b_7, kbproto-1.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXaw-1.0.4_1,1, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXmu-1.0.3,1, libXp-1.0.0,1, libXpm-3.5.7, libXt-1.0.5_1, libiconv-1.11_1, open-motif-2.2.3_5, pkg-config-0.23_1, png-1.2.33, printproto-1.0.3, xbitmaps-1.0.1, xextproto-7.0.2, xproto-7.0.10_1

emboss-5.0.0
A collection of open source tools for genetic sequence analysis
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: clustalw-2.0.6, freetype2-2.3.7, gd-2.0.35,1, gettext-0.17_1, gmake-3.81_3, jpeg-6b_7, kbproto-1.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXaw-1.0.4_1,1, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXmu-1.0.3,1, libXp-1.0.0,1, libXpm-3.5.7, libXt-1.0.5_1, libiconv-1.11_1, libtool-1.5.26, open-motif-2.2.3_5, pkg-config-0.23_1, png-1.2.33, primer3-1.1.3, printproto-1.0.3, xbitmaps-1.0.1, xextproto-7.0.2, xproto-7.0.10_1

fasta-21.u1.d1
A collection of programs for searching DNA and protein databases
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org

fasta3-35.3.6
A collection of programs for searching DNA and protein databases
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar

fastdnaml-1.2.2_1
Faster DNAML, makes phylogenetic trees using maximum likelihood
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: gettext-0.17_1, gmake-3.81_3, libiconv-1.11_1

finchtv-1.3.1
A chromatogram trace viewer
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: linux_base-fc-4_13

fluctuate-1.40
A program to fit population models
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org

garlic-1.5_2
Molecular viewer, editor and visualization program
Long description | Package | Sources | Main Web Site
Maintained by: maho@FreeBSD.org
Requires: gettext-0.17_1, gmake-3.81_3, kbproto-1.0.3, libX11-1.1.3_1,1, libXau-1.0.3_2, libXdmcp-1.0.2_1, libiconv-1.11_1, pkg-config-0.23_1, xproto-7.0.10_1

genpak-0.26_4
A set of small utilities to manipulate DNA sequences
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: freetype2-2.3.7, gd-2.0.35,1, gettext-0.17_1, gmake-3.81_3, jpeg-6b_7, libiconv-1.11_1, pkg-config-0.23_1, png-1.2.33

gff2ps-0.98d_2
Converts gff-formated genomic data-sets to PostScript
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: bash-3.2.39_1, gawk-3.1.6_1, gettext-0.17_1, libiconv-1.11_1

gmap-2006.04.21
A Genomic Mapping and Alignment Program for mRNA and EST Sequences
Long description | Package | Sources | Main Web Site
Maintained by: rpz@cse.wustl.edu
Requires: gettext-0.17_1, gmake-3.81_3, libiconv-1.11_1

gperiodic-2.0.10_2
Displays a periodic table of the elements
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: atk-1.22.0_1, bitstream-vera-1.10_4, cairo-1.6.4_3,1, compositeproto-0.4, damageproto-1.1.0_2, encodings-1.0.2,1, expat-2.0.1, fixesproto-4.0, font-bh-ttf-1.0.0, font-misc-ethiopic-1.0.0, font-misc-meltho-1.0.0_1, font-util-1.0.1, fontconfig-2.5.0,1, freetype2-2.3.7, gamin-0.1.9_2, gettext-0.17_1, gio-fam-backend-2.16.5, glib-2.16.5, gtk-2.12.11_1, hicolor-icon-theme-0.10_2, inputproto-1.4.2.1, intltool-0.37.1, jpeg-6b_7, kbproto-1.0.3, libX11-1.1.3_1,1, libXau-1.0.3_2, libXcomposite-0.4.0,1, libXcursor-1.1.9_1, libXdamage-1.1.1, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXfixes-4.0.3_1, libXft-2.1.13, libXi-1.1.3,1, libXinerama-1.0.2,1, libXrandr-1.2.2_1, libXrender-0.9.4_1, libfontenc-1.0.4, libiconv-1.11_1, libpthread-stubs-0.1, libxcb-1.1.90.1, libxml2-2.6.32_2, mkfontdir-1.0.3_1, mkfontscale-1.0.3, p5-XML-Parser-2.36, pango-1.20.5, pcre-7.8, perl-5.8.8_1, pixman-0.10.0_2, pkg-config-0.23_1, png-1.2.33, python25-2.5.2_3, randrproto-1.2.1, renderproto-0.9.3, shared-mime-info-0.51, tiff-3.8.2_2, xcb-proto-1.2, xcb-util-0.2.1, xextproto-7.0.2, xineramaproto-1.1.2, xorg-fonts-truetype-7.3, xproto-7.0.10_1

grappa-2.0
Genome Rearrangements Analysis and Phylogeny Software
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: gettext-0.17_1, gmake-3.81_3, libiconv-1.11_1

hmmer-2.3.2
Profile hidden Markov models for biological sequence analysis
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: perl-5.8.8_1

jalview-2.07_2
A viewer and editor for multiple sequence alignments
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: apache-ant-1.7.0_2, diablo-jdk-1.6.0.07.02_2, inputproto-1.4.2.1, javavmwrapper-2.3.2, kbproto-1.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXi-1.1.3,1, libXp-1.0.0,1, libXt-1.0.5_1, libXtst-1.0.3_1, pkg-config-0.23_1, printproto-1.0.3, recordproto-1.13.2, xextproto-7.0.2, xproto-7.0.10_1
Also listed in: Java

kinemage-5.79_1
A molecular visualization program with special functions
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: kbproto-1.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXaw-1.0.4_1,1, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXmu-1.0.3,1, libXp-1.0.0,1, libXpm-3.5.7, libXt-1.0.5_1, open-motif-2.2.3_5, pkg-config-0.23_1, printproto-1.0.3, xbitmaps-1.0.1, xextproto-7.0.2, xproto-7.0.10_1

lagan-1.2
Efficient tools for large-scale multiple alignments of genomic DNA
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: perl-5.8.8_1

lamarc-2.1.3,1
A package of programs for computing population parameters
Long description | Sources | Main Web Site
Maintained by: pgollucci@FreeBSD.org

libgenome-0.5.2_1
Toolkit for developing bioinformatic related software in C++
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: libtool-1.5.26

linux-foldingathome-5.04
Distributed client for Protein Folding
Long description | Package | Sources | Main Web Site
Maintained by: onatan@gmail.com
Requires: linux_base-fc-4_13

lsysexp-0.67_8
A GTK based program for viewing and creating L-system fractals
Long description | Package | Sources | Main Web Site
Maintained by: dyeske@gmail.com
Requires: atk-1.22.0_1, bitstream-vera-1.10_4, cairo-1.6.4_3,1, compositeproto-0.4, damageproto-1.1.0_2, encodings-1.0.2,1, expat-2.0.1, fixesproto-4.0, font-bh-ttf-1.0.0, font-misc-ethiopic-1.0.0, font-misc-meltho-1.0.0_1, font-util-1.0.1, fontconfig-2.5.0,1, freetype2-2.3.7, gamin-0.1.9_2, gettext-0.17_1, gio-fam-backend-2.16.5, glib-2.16.5, gtk-2.12.11_1, hicolor-icon-theme-0.10_2, inputproto-1.4.2.1, intltool-0.37.1, jpeg-6b_7, kbproto-1.0.3, libX11-1.1.3_1,1, libXau-1.0.3_2, libXcomposite-0.4.0,1, libXcursor-1.1.9_1, libXdamage-1.1.1, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXfixes-4.0.3_1, libXft-2.1.13, libXi-1.1.3,1, libXinerama-1.0.2,1, libXrandr-1.2.2_1, libXrender-0.9.4_1, libfontenc-1.0.4, libiconv-1.11_1, libpthread-stubs-0.1, libxcb-1.1.90.1, libxml2-2.6.32_2, mkfontdir-1.0.3_1, mkfontscale-1.0.3, p5-XML-Parser-2.36, pango-1.20.5, pcre-7.8, perl-5.8.8_1, pixman-0.10.0_2, pkg-config-0.23_1, png-1.2.33, python25-2.5.2_3, randrproto-1.2.1, renderproto-0.9.3, shared-mime-info-0.51, tiff-3.8.2_2, xcb-proto-1.2, xcb-util-0.2.1, xextproto-7.0.2, xineramaproto-1.1.2, xorg-fonts-truetype-7.3, xproto-7.0.10_1

mafft-5.743
Multiple sequence alignments based on fast Fourier transform
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: fasta3-35.3.6

mapm3-3.0
Constructs linkage maps of markers segregating in experimental crosses
Long description | Package | Sources | Main Web Site
Maintained by: tphilipp@potion-studios.com

migrate-2.4.3_1
A program to estimate population sizes and migration rates
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org

minc-1.4_2
Medical Imaging NetCDF
Long description | Package | Sources | Main Web Site
Maintained by: bacon@smithers.neuro.mcw.edu
Requires: libtool-1.5.26, netcdf-3.6.3_1
Also listed in: Science

minc-2.0.09_1
Medical Imaging NetCDF
Long description | Package | Sources | Main Web Site
Maintained by: bacon@smithers.neuro.mcw.edu
Requires: hdf5-1.6.7_1, libtool-1.5.26, netcdf-3.6.3_1
Also listed in: Science

molden-4.6,1
Display molecular orbitals and electron densities in 2D and 3D
Long description | Sources | Main Web Site
Maintained by: oivulf@gmail.com
Requires: damageproto-1.1.0_2, fixesproto-4.0, gcc-4.2.5_20080702, inputproto-1.4.2.1, kbproto-1.0.3, libGL-7.0.3, libGLU-7.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXdamage-1.1.1, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXfixes-4.0.3_1, libXi-1.1.3,1, libXmu-1.0.3,1, libXt-1.0.5_1, libXxf86vm-1.0.1, libdrm-2.3.1, libglut-7.0.3, libgmp-4.2.4, libiconv-1.11_1, mpfr-2.3.2, pkg-config-0.23_1, xextproto-7.0.2, xf86vidmodeproto-2.2.2, xproto-7.0.10_1

mopac-7.1.10_1,1
Semi-empirical (MNDO, etc.) molecular orbital calculation
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: f2c-20060810_2, gettext-0.17_1, gmake-3.81_3, libiconv-1.11_1

mrbayes-3.1.2
Bayesian inference of phylogeny
Long description | Package | Sources | Main Web Site
Maintained by: mzaki@m.u-tokyo.ac.jp
Requires: gettext-0.17_1, gmake-3.81_3, libiconv-1.11_1, readline-5.2_1

mummer-3.20
A modular system for rapid whole genome alignment
Long description | Package | Sources | Main Web Site
Maintained by: Anthony.Maher@uts.edu.au
Requires: gettext-0.17_1, gmake-3.81_3, libiconv-1.11_1

muscle-3.6
MUltiple Sequence Comparison by Log-Expectation
Long description | Package | Sources | Main Web Site
Maintained by: mzaki@m.u-tokyo.ac.jp
Requires: gettext-0.17_1, gmake-3.81_3, libiconv-1.11_1

ncbi-toolkit-2006.05.07_1
NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: kbproto-1.0.3, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXau-1.0.3_2, libXaw-1.0.4_1,1, libXdmcp-1.0.2_1, libXext-1.0.3,1, libXmu-1.0.3,1, libXp-1.0.0,1, libXpm-3.5.7, libXt-1.0.5_1, open-motif-2.2.3_5, pkg-config-0.23_1, printproto-1.0.3, xbitmaps-1.0.1, xextproto-7.0.2, xproto-7.0.10_1

njplot-2.1
Phylogenetic tree drawing program capable of interactive manipulation
Long description | Package | Sources | Main Web Site
Maintained by: mzaki@m.u-tokyo.ac.jp
Requires: compositeproto-0.4, damageproto-1.1.0_2, dmxproto-2.2.2, expat-2.0.1, fixesproto-4.0, fontcacheproto-0.1.2, fontconfig-2.5.0,1, fontsproto-2.0.2, freetype2-2.3.7, inputproto-1.4.2.1, kbproto-1.0.3, libFS-1.0.0_1, libICE-1.0.4_1,1, libSM-1.0.3_1,1, libX11-1.1.3_1,1, libXScrnSaver-1.1.2, libXTrap-1.0.0, libXau-1.0.3_2, libXaw-1.0.4_1,1, libXcomposite-0.4.0,1, libXcursor-1.1.9_1, libXdamage-1.1.1, libXdmcp-1.0.2_1, libXevie-1.0.2, libXext-1.0.3,1, libXfixes-4.0.3_1, libXfont-1.3.1_3,1, libXfontcache-1.0.4, libXft-2.1.13, libXi-1.1.3,1, libXinerama-1.0.2,1, libXmu-1.0.3,1, libXp-1.0.0,1, libXpm-3.5.7, libXprintAppUtil-1.0.1, libXprintUtil-1.0.1, libXrandr-1.2.2_1, libXrender-0.9.4_1, libXres-1.0.3_3, libXt-1.0.5_1, libXtst-1.0.3_1, libXv-1.0.3_1,1, libXvMC-1.0.4_1, libXxf86dga-1.0.2, libXxf86misc-1.0.1, libXxf86vm-1.0.1, libdmx-1.0.2_1, libfontenc-1.0.4, liboldX-1.0.1, libxkbfile-1.0.4, libxkbui-1.0.2_1, ncbi-toolkit-2006.05.07_1, open-motif-2.2.3_5, pixman-0.10.0_2, pkg-config-0.23_1, printproto-1.0.3, randrproto-1.2.1, recordproto-1.13.2, renderproto-0.9.3, scrnsaverproto-1.1.0, trapproto-3.4.3, videoproto-2.2.2, xbitmaps-1.0.1, xextproto-7.0.2, xf86dgaproto-2.0.3, xf86miscproto-0.9.2, xf86vidmodeproto-2.2.2, xineramaproto-1.1.2, xorg-libraries-7.3_2, xproto-7.0.10_1, xtrans-1.0.4

ortep3-1.0.3_3
The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: gcc-4.2.5_20080702, libgmp-4.2.4, libiconv-1.11_1, mpfr-2.3.2

p5-AcePerl-1.91
Perl5 interface to the ACEDB genome database system
Long description | Package | Sources | Main Web Site
Maintained by: pgollucci@FreeBSD.org
Requires: p5-Cache-2.04_1, p5-Cache-Cache-1.05_1, p5-Digest-MD5-2.38, p5-Digest-SHA1-2.11, p5-Error-0.17015, p5-File-NFSLock-1.20, p5-Heap-0.80, p5-IO-String-1.08, p5-IPC-ShareLite-0.13, p5-Scalar-List-Utils-1.19,1, p5-TimeDate-1.16,1, perl-5.8.8_1
Also listed in: Databases, Perl5

p5-Bio-ASN1-EntrezGene-1.091
Regular expression-based Perl Parser for NCBI Entrez Gene
Long description | Package | Sources | Main Web Site
Maintained by: mauricio@arareko.net
Requires: perl-5.8.8_1
Also listed in: Perl5

p5-Bio-Das-1.09
Client-side library for Distributed Genome Annotation System
Long description | Package | Sources | Main Web Site
Maintained by: perl@FreeBSD.org
Requires: expat-2.0.1, freetype2-2.3.7, gd-2.0.35,1, jpeg-6b_7, libiconv-1.11_1, mysql-client-5.0.67_1, p5-AcePerl-1.91, p5-Cache-2.04_1, p5-Cache-Cache-1.05_1, p5-Compress-Raw-Zlib-2.015, p5-Compress-Zlib-2.015, p5-Convert-BinHex-1.119, p5-Crypt-SSLeay-0.57, p5-DBD-mysql-4.006, p5-DBI-1.60.4, p5-Digest-MD5-2.38, p5-Digest-SHA1-2.11, p5-Email-Date-Format-1.002, p5-Error-0.17015, p5-File-NFSLock-1.20, p5-File-Temp-0.20, p5-GD-2.41, p5-HTML-Parser-3.58, p5-HTML-Tagset-3.20, p5-HTML-Tree-3.23, p5-Heap-0.80, p5-IO-Compress-Base-2.015, p5-IO-Compress-Zlib-2.015, p5-IO-Socket-SSL-1.18, p5-IO-String-1.08, p5-IO-stringy-2.110, p5-IPC-ShareLite-0.13, p5-MIME-Base64-3.07, p5-MIME-Lite-3.02.3, p5-MIME-Tools-5.427,2, p5-MIME-Types-1.24, p5-Mail-Tools-2.04, p5-Net-SSLeay-1.35, p5-Parse-RecDescent-1.96.0_1, p5-SOAP-Lite-0.710.08_1, p5-Scalar-List-Utils-1.19,1, p5-Storable-2.18, p5-Test-Simple-0.86, p5-Text-Iconv-1.7, p5-Text-Shellwords-1.08, p5-Tie-IxHash-1.21, p5-TimeDate-1.16,1, p5-URI-1.37, p5-XML-DOM-1.44, p5-XML-Filter-BufferText-1.01, p5-XML-Handler-YAWriter-0.23, p5-XML-NamespaceSupport-1.09_1, p5-XML-Node-0.11, p5-XML-Parser-2.36, p5-XML-RegExp-0.03, p5-XML-SAX-0.96, p5-XML-SAX-Expat-0.40, p5-XML-SAX-Writer-0.50, p5-XML-Simple-2.18, p5-XML-Twig-3.32, p5-XML-Writer-0.604, p5-XML-XPath-1.13, p5-bioperl-1.4_1, p5-libwww-5.820, p5-libxml-0.08, p5-version-0.76, perl-5.8.8_1, pkg-config-0.23_1, png-1.2.33
Also listed in: Perl5

p5-Bio-Phylo-0.16
Phylogenetic analysis using perl
Long description | Package | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: expat-2.0.1, freetype2-2.3.7, gd-2.0.35,1, jpeg-6b_7, libiconv-1.11_1, mysql-client-5.0.67_1, p5-AcePerl-1.91, p5-Cache-2.04_1, p5-Cache-Cache-1.05_1, p5-Class-Data-Inheritable-0.08, p5-Compress-Raw-Zlib-2.015, p5-Compress-Zlib-2.015, p5-Convert-BinHex-1.119, p5-Crypt-SSLeay-0.57, p5-DBD-mysql-4.006, p5-DBI-1.60.4, p5-Devel-StackTrace-1.20, p5-Digest-MD5-2.38, p5-Digest-SHA1-2.11, p5-Email-Date-Format-1.002, p5-Error-0.17015, p5-Exception-Class-1.26, p5-ExtUtils-CBuilder-0.24, p5-ExtUtils-ParseXS-2.19, p5-File-NFSLock-1.20, p5-File-Temp-0.20, p5-GD-2.41, p5-HTML-Parser-3.58, p5-HTML-Tagset-3.20, p5-HTML-Tree-3.23, p5-Heap-0.80, p5-IO-Compress-Base-2.015, p5-IO-Compress-Zlib-2.015, p5-IO-Socket-SSL-1.18, p5-IO-String-1.08, p5-IO-stringy-2.110, p5-IPC-ShareLite-0.13, p5-MIME-Base64-3.07, p5-MIME-Lite-3.02.3, p5-MIME-Tools-5.427,2, p5-MIME-Types-1.24, p5-Mail-Tools-2.04, p5-Math-Random-0.70, p5-Module-Build-0.30, p5-Net-SSLeay-1.35, p5-Parse-RecDescent-1.96.0_1, p5-SOAP-Lite-0.710.08_1, p5-SVG-2.44, p5-Scalar-List-Utils-1.19,1, p5-Spiffy-0.30, p5-Storable-2.18, p5-Test-Base-0.54_1, p5-Test-Simple-0.86, p5-Text-Iconv-1.7, p5-Text-Shellwords-1.08, p5-Tie-IxHash-1.21, p5-TimeDate-1.16,1, p5-URI-1.37, p5-XML-DOM-1.44, p5-XML-Filter-BufferText-1.01, p5-XML-Handler-YAWriter-0.23, p5-XML-NamespaceSupport-1.09_1, p5-XML-Node-0.11, p5-XML-Parser-2.36, p5-XML-RegExp-0.03, p5-XML-SAX-0.96, p5-XML-SAX-Expat-0.40, p5-XML-SAX-Writer-0.50, p5-XML-Simple-2.18, p5-XML-Twig-3.32, p5-XML-Writer-0.604, p5-XML-XPath-1.13, p5-YAML-0.66, p5-bioperl-1.4_1, p5-libwww-5.820, p5-libxml-0.08, p5-version-0.76, perl-5.8.8_1, pkg-config-0.23_1, png-1.2.33
Also listed in: Perl5

p5-bioperl-1.4_1
A collection of Perl modules for bioinformatics
Long description | Package | Sources | Main Web Site
Maintained by: fernan@iib.unsam.edu.ar
Requires: expat-2.0.1, freetype2-2.3.7, gd-2.0.35,1, jpeg-6b_7, libiconv-1.11_1, mysql-client-5.0.67_1, p5-AcePerl-1.91, p5-Cache-2.04_1, p5-Cache-Cache-1.05_1, p5-Compress-Raw-Zlib-2.015, p5-Compress-Zlib-2.015, p5-Convert-BinHex-1.119, p5-Crypt-SSLeay-0.57, p5-DBD-mysql-4.006, p5-DBI-1.60.4, p5-Digest-MD5-2.38, p5-Digest-SHA1-2.11, p5-Email-Date-Format-1.002, p5-Error-0.17015, p5-File-NFSLock-1.20, p5-File-Temp-0.20, p5-GD-2.41, p5-HTML-Parser-3.58, p5-HTML-Tagset-3.20, p5-HTML-Tree-3.23, p5-Heap-0.80, p5-IO-Compress-Base-2.015, p5-IO-Compress-Zlib-2.015, p5-IO-Socket-SSL-1.18, p5-IO-String-1.08, p5-IO-stringy-2.110, p5-IPC-ShareLite-0.13, p5-MIME-Base64-3.07, p5-MIME-Lite-3.02.3, p5-MIME-Tools-5.427,2, p5-MIME-Types-1.24, p5-Mail-Tools-2.04, p5-Net-SSLeay-1.35, p5-Parse-RecDescent-1.96.0_1, p5-SOAP-Lite-0.710.08_1, p5-Scalar-List-Utils-1.19,1, p5-Storable-2.18, p5-Test-Simple-0.86, p5-Text-Iconv-1.7, p5-Text-Shellwords-1.08, p5-Tie-IxHash-1.21, p5-TimeDate-1.16,1, p5-URI-1.37, p5-XML-DOM-1.44, p5-XML-Filter-BufferText-1.01, p5-XML-Handler-YAWriter-0.23, p5-XML-NamespaceSupport-1.09_1, p5-XML-Node-0.11, p5-XML-Parser-2.36, p5-XML-RegExp-0.03, p5-XML-SAX-0.96, p5-XML-SAX-Expat-0.40, p5-XML-SAX-Writer-0.50, p5-XML-Simple-2.18, p5-XML-Twig-3.32, p5-XML-Writer-0.604, p5-XML-XPath-1.13, p5-libwww-5.820, p5-libxml-0.08, p5-version-0.76, perl-5.8.8_1, pkg-config-0.23_1, png-1.2.33
Also listed in: Perl5

p5-bioperl-1.5.2
A collection of Perl modules for bioinformatics (developer release)
Long description | Package | Sources | Main Web Site
Maintained by: mauricio@arareko.net
Requires: expat-2.0.1, freetype2-2.3.7, gd-2.0.35,1, jpeg-6b_7, libiconv-1.11_1, mysql-client-5.0.67_1, p5-AcePerl-1.91, p5-Bio-ASN1-EntrezGene-1.091, p5-Cache-2.04_1, p5-Cache-Cache-1.05_1, p5-Class-AutoClass-1.01, p5-Clone-0.29, p5-Compress-Raw-Zlib-2.015, p5-Compress-Zlib-2.015, p5-Convert-BinHex-1.119, p5-Convert-Binary-C-0.71, p5-Crypt-SSLeay-0.57, p5-DBD-mysql-4.006, p5-DBI-1.60.4, p5-Data-Stag-0.10, p5-Digest-MD5-2.38, p5-Digest-SHA1-2.11, p5-Email-Date-Format-1.002, p5-Error-0.17015, p5-ExtUtils-CBuilder-0.24, p5-ExtUtils-ParseXS-2.19, p5-File-NFSLock-1.20, p5-File-Temp-0.20, p5-GD-2.41, p5-GD-SVG-0.30, p5-Graph-0.84,1, p5-HTML-Parser-3.58, p5-HTML-Tagset-3.20, p5-HTML-Tree-3.23, p5-Heap-0.80, p5-IO-Compress-Base-2.015, p5-IO-Compress-Zlib-2.015, p5-IO-Socket-SSL-1.18, p5-IO-String-1.08, p5-IO-stringy-2.110, p5-IPC-ShareLite-0.13, p5-MIME-Base64-3.07, p5-MIME-Lite-3.02.3, p5-MIME-Tools-5.427,2, p5-MIME-Types-1.24, p5-Mail-Tools-2.04, p5-Module-Build-0.30, p5-Net-SSLeay-1.35, p5-OLE-Storage_Lite-0.17, p5-SOAP-Lite-0.710.08_1, p5-SVG-2.44, p5-SVG-Graph-0.01, p5-Scalar-List-Utils-1.19,1, p5-Set-Scalar-1.22, p5-Spiffy-0.30, p5-Spreadsheet-ParseExcel-0.3200, p5-Storable-2.18, p5-Test-Base-0.54_1, p5-Test-Harness-3.14, p5-Text-Iconv-1.7, p5-Text-Shellwords-1.08, p5-Tie-IxHash-1.21, p5-TimeDate-1.16,1, p5-URI-1.37, p5-XML-DOM-1.44, p5-XML-DOM-XPath-0.14, p5-XML-Filter-BufferText-1.01, p5-XML-Handler-YAWriter-0.23, p5-XML-NamespaceSupport-1.09_1, p5-XML-Parser-2.36, p5-XML-RegExp-0.03, p5-XML-SAX-0.96, p5-XML-SAX-Expat-0.40, p5-XML-SAX-Writer-0.50, p5-XML-Simple-2.18, p5-XML-Twig-3.32, p5-XML-Writer-0.604, p5-XML-XPath-1.13, p5-XML-XPathEngine-0.11, p5-YAML-0.66, p5-libwww-5.820, p5-libxml-0.08, p5-version-0.76, perl-5.8.8_1, pkg-config-0.23_1, png-1.2.33
Also listed in: Perl5

p5-bioperl-run-1.4_1
Wrapper modules for common bioinformatics tools
Long description | Package | Sources | Main Web Site
Maintained by: mauricio@arareko.net
Requires: expat-2.0.1, freetype2-2.3.7, gd-2.0.35,1, jpeg-6b_7, libiconv-1.11_1, mysql-client-5.0.67_1, p5-AcePerl-1.91, p5-Algorithm-Diff-1.1902, p5-Cache-2.04_1, p5-Cache-Cache-1.05_1, p5-Compress-Raw-Zlib-2.015, p5-Compress-Zlib-2.015, p5-Convert-BinHex-1.119, p5-Crypt-SSLeay-0.57, p5-DBD-mysql-4.006, p5-DBI-1.60.4, p5-Digest-MD5-2.38, p5-Digest-SHA1-2.11, p5-Email-Date-Format-1.002, p5-Error-0.17015, p5-File-NFSLock-1.20, p5-File-Temp-0.20, p5-GD-2.41, p5-HTML-Parser-3.58, p5-HTML-Tagset-3.20, p5-HTML-Tree-3.23, p5-Heap-0.80, p5-IO-Compress-Base-2.015, p5-IO-Compress-Zlib-2.015, p5-IO-Socket-SSL-1.18, p5-IO-String-1.08, p5-IO-stringy-2.110, p5-IPC-ShareLite-0.13, p5-MIME-Base64-3.07, p5-MIME-Lite-3.02.3, p5-MIME-Tools-5.427,2, p5-MIME-Types-1.24, p5-Mail-Tools-2.04, p5-Net-SSLeay-1.35, p5-Parse-RecDescent-1.96.0_1, p5-SOAP-Lite-0.710.08_1, p5-Scalar-List-Utils-1.19,1, p5-Storable-2.18, p5-Test-Simple-0.86, p5-Text-Iconv-1.7, p5-Text-Shellwords-1.08, p5-Tie-IxHash-1.21, p5-TimeDate-1.16,1, p5-URI-1.37, p5-XML-DOM-1.44, p5-XML-Filter-BufferText-1.01, p5-XML-Handler-YAWriter-0.23, p5-XML-NamespaceSupport-1.09_1, p5-XML-Node-0.11, p5-XML-Parser-2.36, p5-XML-RegExp-0.03, p5-XML-SAX-0.96, p5-XML-SAX-Expat-0.40, p5-XML-SAX-Writer-0.50, p5-XML-Simple-2.18, p5-XML-Twig-3.32, p5-XML-Writer-0.604, p5-XML-XPath-1.13, p5-bioperl-1.4_1, p5-libwww-5.820, p5-libxml-0.08, p5-version-0.76, perl-5.8.8_1, pkg-config-0.23_1, png-1.2.33
Also listed in: Perl5